Projects
Kim, K., Chaware, A., Cook, C.B. et al. Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS). npj Imaging 2, 39 (2024). [Project Page]
Zhou, K.C., Harfouche, M., Zheng, M. et al. Computational 3D topographic microscopy from terabytes of data per sample. J Big Data 11, 62 (2024). [Project Page]
Shiqi Xu, Xi Yang, Paul Ritter, Xiang Dai, Kyung Chul Lee, Lucas Kreiss, Kevin C. Zhou, Kanghyun Kim, Amey Chaware, Jadee Neff, Carolyn Glass, Seung Ah Lee, Oliver Friedrich, and Roarke Horstmeyer “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging,” Advanced Photonics 6(2), 026004 (2024). [Project Page]
Kreiss, L., Jiang, S., Li, X. et al. Digital staining in optical microscopy using deep learning – a review. PhotoniX 4, 34 (2023).[Project Page]
Wu MM, Horstmeyer R, Carp SA. scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations. J Biomed Opt. (2023). [Project Page]
Shiqi Xu, Xi Yang, Wenhui Liu, Joakim Jönsson, Ruobing Qian, Pavan Chandra Konda, Kevin C. Zhou, Lucas Kreiß, Haoqian Wang, Qionghai Dai, Edouard Berrocal, Roarke Horstmeyer. Imaging Dynamics Beneath Turbid Media via Parallelized Single-Photon Detection. Advanced Science (2022). [Project Page]
Xiang Dai, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. Quantitative Jones matrix imaging using vectorial Fourier ptychography. Biomedical Optics Express (2022). [Project Page]
Xing Yao, Vinayak Pathak, Haoran Xi, Kevin C. Zhou, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, Yuting Li, Tim Dunn and Roarke Horstmeyer. Increasing a Microscope’s Effective Field of View via Overlapped Imaging and Deep Learning Classification. Optics Express (2022). [Project Page]
Colin L. Cooke, Fanjie Kong, Amey Chaware, Kevin C. Zhou, Kanghyun Kim, Rong Xu, D. Michael Ando, Samuel J. Yang, Pavan Chandra Konda, Roarke Horstmeyer. Physics-enhanced machine learning for virtual fluorescence microscopy. ICCV (2021). [Project Page]
Xi Yang, Pavan Chandra Konda, Shiqi Xu, Liheng Bian, and Roarke Horstmeyer. “Quantized Fourier ptychography with binary images from SPAD cameras,” Photon. Res. 9, 1958-1969 (2021). [Project Page]
Colin L. Cooke, Kanghyun Kim, Shiqi Xu, Amey Chaware, Xing Yao, Xi Yang, Jadee Neff, Patricia Pittman, Chad McCall, Carolyn Glass, Xiaoyin Sara Jiang, Roarke Horstmeyer. Deep Optical Blood Analysis: COVID-19 Detection as a Case Study in Next Generation Blood Screening. medRxiv (2021). [Project Page]
Wenhui Liu, Ruobing Qian, Shiqi Xu, Pavan Chandra Konda, Joakim Jönsson, Mark Harfouche, Dawid Borycki, Colin Cooke, Edouard Berrocal, Qionghai Dai, Haoqian Wang, Roarke Horstmeyer. Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection. APL Photonics (2020). [Project Page]
Kevin C. Zhou and Roarke Horstmeyer. Diffraction tomography with a deep image prior. Optics Express (2020). [Project Page]
Kanghyun Kim, Pavan Chandra Konda, Colin L.Cooke, Roarke Horstmeyer. Multi-element microscope optimization by a learned sensing network with composite physical layers. Optics Letters (2020). [Project Page]
Amey Chaware, Colin L. Cooke, Kanghyun Kim, Roarke Horstmeyer. Towards an intelligent microscope: adaptively learned illumination for optimal sample classification. ICASSP (2020). [Project Page]
Alex Muthumbi, Amey Chaware, Kanghyun Kim, Kevin Zhou, Pavan Chandra Konda, Richard Chen, Benjamin Judkewitz, Andreas Erdmann, Barbara Kappes, Roarke Horstmeyer. Learned Sensing: Jointly optimized microscope hardware for accurate image classification. Biomedical Optics Express (2019). [Project Page]
Zhou, K.C., Harfouche, M., Zheng, M. et al. Computational 3D topographic microscopy from terabytes of data per sample. J Big Data 11, 62 (2024). [Project Page]
Shiqi Xu, Xi Yang, Paul Ritter, Xiang Dai, Kyung Chul Lee, Lucas Kreiss, Kevin C. Zhou, Kanghyun Kim, Amey Chaware, Jadee Neff, Carolyn Glass, Seung Ah Lee, Oliver Friedrich, and Roarke Horstmeyer “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging,” Advanced Photonics 6(2), 026004 (2024). [Project Page]
Kreiss, L., Jiang, S., Li, X. et al. Digital staining in optical microscopy using deep learning – a review. PhotoniX 4, 34 (2023).[Project Page]
Wu MM, Horstmeyer R, Carp SA. scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations. J Biomed Opt. (2023). [Project Page]
Shiqi Xu, Xi Yang, Wenhui Liu, Joakim Jönsson, Ruobing Qian, Pavan Chandra Konda, Kevin C. Zhou, Lucas Kreiß, Haoqian Wang, Qionghai Dai, Edouard Berrocal, Roarke Horstmeyer. Imaging Dynamics Beneath Turbid Media via Parallelized Single-Photon Detection. Advanced Science (2022). [Project Page]
Xiang Dai, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. Quantitative Jones matrix imaging using vectorial Fourier ptychography. Biomedical Optics Express (2022). [Project Page]
Xing Yao, Vinayak Pathak, Haoran Xi, Kevin C. Zhou, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, Yuting Li, Tim Dunn and Roarke Horstmeyer. Increasing a Microscope’s Effective Field of View via Overlapped Imaging and Deep Learning Classification. Optics Express (2022). [Project Page]
Colin L. Cooke, Fanjie Kong, Amey Chaware, Kevin C. Zhou, Kanghyun Kim, Rong Xu, D. Michael Ando, Samuel J. Yang, Pavan Chandra Konda, Roarke Horstmeyer. Physics-enhanced machine learning for virtual fluorescence microscopy. ICCV (2021). [Project Page]
Xi Yang, Pavan Chandra Konda, Shiqi Xu, Liheng Bian, and Roarke Horstmeyer. “Quantized Fourier ptychography with binary images from SPAD cameras,” Photon. Res. 9, 1958-1969 (2021). [Project Page]
Colin L. Cooke, Kanghyun Kim, Shiqi Xu, Amey Chaware, Xing Yao, Xi Yang, Jadee Neff, Patricia Pittman, Chad McCall, Carolyn Glass, Xiaoyin Sara Jiang, Roarke Horstmeyer. Deep Optical Blood Analysis: COVID-19 Detection as a Case Study in Next Generation Blood Screening. medRxiv (2021). [Project Page]
Wenhui Liu, Ruobing Qian, Shiqi Xu, Pavan Chandra Konda, Joakim Jönsson, Mark Harfouche, Dawid Borycki, Colin Cooke, Edouard Berrocal, Qionghai Dai, Haoqian Wang, Roarke Horstmeyer. Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection. APL Photonics (2020). [Project Page]
Kevin C. Zhou and Roarke Horstmeyer. Diffraction tomography with a deep image prior. Optics Express (2020). [Project Page]
Kanghyun Kim, Pavan Chandra Konda, Colin L.Cooke, Roarke Horstmeyer. Multi-element microscope optimization by a learned sensing network with composite physical layers. Optics Letters (2020). [Project Page]
Amey Chaware, Colin L. Cooke, Kanghyun Kim, Roarke Horstmeyer. Towards an intelligent microscope: adaptively learned illumination for optimal sample classification. ICASSP (2020). [Project Page]
Alex Muthumbi, Amey Chaware, Kanghyun Kim, Kevin Zhou, Pavan Chandra Konda, Richard Chen, Benjamin Judkewitz, Andreas Erdmann, Barbara Kappes, Roarke Horstmeyer. Learned Sensing: Jointly optimized microscope hardware for accurate image classification. Biomedical Optics Express (2019). [Project Page]